How ecDNA Helps Cancer Evolve Drug Resistance – The Babak Lab
The Babak Lab/LinkedIn

How ecDNA Helps Cancer Evolve Drug Resistance – The Babak Lab

The Babak Lab shared a post on LinkedIn about a recent article by Oliver Chung et al, adding:

“Scientific Wednesdays: How ecDNA helps cancer evolve drug resistance

A new study published in PNAS explores how extrachromosomal circular DNA, or ecDNA, forms inside cancer cells and helps tumors rapidly adapt under treatment pressure.

Key Insights

  • ⁠ecDNA acts like a mobile genetic shortcut, allowing cancer cells to amplify oncogenes and drug-resistance genes outside chromosomes
  • ⁠Genome-wide CRISPR screening identified BRCA1-A and LIG4 complexes as key drivers of ecDNA formation
  • ⁠BRCA1-A protects broken DNA ends from excessive resection, keeping them available for circularization
  • ⁠LIG4 then joins these DNA ends together, enabling the formation of ecDNA circles
  • ⁠In glioblastoma patient tumors, most ecDNA junctions carried a LIG4-like repair signature
  • ⁠Disrupting BRCA1-A or LIG4 impaired ecDNA formation across cancer models
  • ⁠Blocking these complexes prevented cancer cells from acquiring resistance to chemotherapy and targeted therapy

Conclusion
This study reveals ecDNA biogenesis as an active DNA repair-driven process rather than a random accident. By identifying BRCA1-A and LIG4 as key mediators, it points to a possible strategy for slowing tumor evolution and preventing ecDNA-driven drug resistance.

Image generated using Sora by OpenAI.”

Title: BRCA1-A and LIG4 complexes mediate ecDNA biogenesis and cancer drug resistance

Authors: Oliver Chung, Shun Yao, Ling Wang, Fu Yang, Lauren Schier, Melissa Aldana, Christian Cerda-Smith, Haley Hutchinson, Kris Wood, Weijia Su, Mustafa Khasraw, Lee Zou, Dale Ramsden, Zhao Zhang

Read the Full Article on PNAS

How ecDNA Helps Cancer Evolve Drug Resistance - The Babak Lab

Maria Babak, Head of The Babak Lab and Assistant Professor at City University of Hong Kong, shared this post, adding:

“BRCA1-A protects the DNA ends, LIG4 closes the circle, and cancer gets a new shortcut to resistance. This work makes ecDNA feel much less mysterious and far more targetable.”

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