Vivek Subbiah: Rethinking Cancer of Unknown Primary in the Precision Oncology Era
Vivek Subbiah/LinkedIn

Vivek Subbiah: Rethinking Cancer of Unknown Primary in the Precision Oncology Era

Vivek Subbiah, Chief of Early-Phase Drug Development at the Sarah Cannon Research Institute, shared a post on X:

“Pleased to share our paper published in Journal of Clinical Oncology ASCO.

Please read the paper and tweetorial +share your thoughts

THREAD: Is It Time to Retire the Unified Cancer of Unknown Primary Concept in the Precision Oncology Era?

Our new commentary challenges a 50-year-old paradigm. Here’s why CUP isn’t one disease, it’s many:

CUP accounts for 2-5% of metastatic cancers. For decades, we’ve treated it as one disease: aggressive, unpredictable, treatment-resistant.

But here’s the problem: this classification was born from diagnostic limitations, not biological understanding.

Molecular profiling has shattered this myth. Gene expression studies identify putative primary sites in 80-90% of CUP cases. NGS reveals actionable mutations in 30-40%. These aren’t random—they mirror patterns in lung, GI, breast, ovarian cancers with KNOWN primaries.

The clinical evidence is compelling: Standard platinum-based chemo: 20-35% response rate, 9-12 months OS Molecularly-guided therapy: 35-55% response rate, >15 months OS We’re not dealing with one aggressive disease.

Two landmark trials changed the game:

  • FUDAN-001: Gene expression-guided therapy → >40% response rate
  • CUPISCO: Molecular profiling vs standard chemo → significant PFS benefit

Both showed what happens when we treat CUP as the heterogeneous entity it truly is.

Immunotherapy exposed the paradox even further: Overall CUP response to checkpoint inhibitors: 15-25% MSI-H/dMMR or TMB-high CUP: 40-50%.

This isn’t a single disease-it’s occult lung, GI, renal, and other cancers, each with different immunotherapy sensitivity.

We propose a new tiered classification:

  • Tier 1A: Molecularly defined occult primaries → site-specific therapy
  • Tier 1B: Actionable targets → targeted therapy/immunotherapy
  • Tier 2: Ambiguous results → biomarker-driven approach
  • Tier 3: True orphans → clinical trials

The hierarchy of decision-making:

  1. Identify actionable mutations and immunotherapy biomarkers
  2. FIRST Use tissue-of-origin when it expands treatment options
  3. Empiric approaches ONLY when molecular profiling yields nothing Molecular features, not anatomy, drive therapy.

Critics say: ‘Not all centers have molecular profiling access.’

Our response: Expand access to diagnostics, don’t perpetuate outdated classifications.

The technology exists. The evidence is clear. The question is implementation, not validity.

For patients, this matters deeply. A CUP diagnosis breeds uncertainty and therapeutic nihilism.

A molecularly-informed diagnosis–>even without knowing the anatomic primary–>offers precision, hope, and rational treatment options. We owe our patients this evolution.

CUP forces us to confront what’s true across ALL oncology: molecular heterogeneity transcends organ boundaries. By necessity, not choice, CUP shows us the future–>where biology, not anatomy, defines cancer. Read the full commentary.”

Title: Is It Time to Retire the Unified Cancer of Unknown Primary Concept in the Precision Oncology Era?

Authors: Vivek Subbiah and F. Anthony Greco

You can read the full article in the Journal of Clinical Oncology.

Vivek Subbiah: Rethinking Cancer of Unknown Primary in the Precision Oncology Era

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