Simona Cristea: Oncotree2vec, a neat ISMB paper from Niko Beerenwinkel’s lab

Simona Cristea, Head of Data Science at Hale Center for Pancreatic Cancer, shared a post on X, about a recent paper by Monica-Andreea Baciu-Drăgan et al., commenting:

“Oncotree2vec, a neat ISMB paper from Niko Beerenwinkel’s lab in ETH CBG, ETH Zurich drawing deep learning parallels between cancer clones in a tree and words in a sentence.The embedding space becomes interpretable by tumor mode of evolution.”

Oncotree2vec — a method for embedding and clustering of tumor mutation trees

Journal: Oxford Academic.

Author: Monica-Andreea Baciu-Drăgan, Niko Beerenwinkel

Source: Simona Cristea/X